| Game Date | Arena | Score | Opponent | Location | Outcome | Game Chart |
| Fri 11/09/2012 | Matadome, Northridge, CA
| 81 - 75 | 178 (11-18) Pepperdine at 281 (12-17) CS Northridge | Away | L | 0.160 |
| Tue 11/13/2012 | Haas Pavilion, Berkeley, CA
| 79 - 62 | 178 (11-18) Pepperdine at 39 (21-12) California | Away | L | 0.011 |
| Fri 11/16/2012 | Firestone Fieldhouse, Malibu, CA
| 58 - 56 | 100 (13-19) Washington St at 178 (11-18) Pepperdine | Home | W | 0.205 |
| Tue 11/20/2012 | Sharp Gymnasium, Houston, TX
| 53 - 57 | 178 (11-18) Pepperdine at 343 (11-17) Houston Baptist | Away | W | 0.576 |
| Sat 11/24/2012 | Firestone Fieldhouse, Malibu, CA
| 72 - 62 | 169 (19-16) UC Irvine at 178 (11-18) Pepperdine | Home | W | 0.904 |
| Thu 11/29/2012 | Max Worthington Arena, Bozeman, MT
| 66 - 76 | 178 (11-18) Pepperdine at 331 (11-17) Montana St | Away | W | 0.823 |
| Sat 12/01/2012 | UCCU Events Center, Orem, UT
| 67 - 63 | 178 (11-18) Pepperdine at 315 (10-18) Utah Valley | Away | L | 0.544 |
| Wed 12/05/2012 | Firestone Fieldhouse, Malibu, CA
| 62 - 40 | 330 (4-24) UC Riverside at 178 (11-18) Pepperdine | Home | W | 0.847 |
| Sun 12/09/2012 | Stan Sheriff Center, Honolulu, HI
| 56 - 63 | 178 (11-18) Pepperdine at 213 (16-15) Hawaii | Away | W | 0.648 |
| Sun 12/16/2012 | Firestone Fieldhouse, Malibu, CA
| 77 - 80 | 282 (10-20) Cent Michigan at 178 (11-18) Pepperdine | Home | L | 0.474 |
| Wed 12/19/2012 | Devlin FIeldhouse, New Orleans, LA
| 58 - 66 | 178 (11-18) Pepperdine at 319 (9-22) Alabama St | Neutral | W | 0.808 |
| Thu 12/20/2012 | Devlin FIeldhouse, New Orleans, LA
| 69 - 54 | 178 (11-18) Pepperdine at 170 (18-15) Tulane | Neutral | L | 0.145 |
| Thu 01/03/2013 | Firestone Fieldhouse, Malibu, CA
| 62 - 78 | 9 (31-3) Gonzaga at 178 (11-18) Pepperdine | Home | L | 0.111 |
| Sat 01/05/2013 | Firestone Fieldhouse, Malibu, CA
| 54 - 47 | 161 (9-21) Portland at 178 (11-18) Pepperdine | Home | W | 0.483 |
| Thu 01/10/2013 | Marriott Center, Provo, UT
| 76 - 51 | 178 (11-18) Pepperdine at 46 (23-12) BYU | Away | L | 0.039 |
| Sat 01/12/2013 | Firestone Fieldhouse, Malibu, CA
| 50 - 62 | 149 (14-18) San Diego at 178 (11-18) Pepperdine | Home | L | 0.086 |
| Sat 01/19/2013 | Firestone Fieldhouse, Malibu, CA
| 76 - 83 | 69 (24-12) Santa Clara at 178 (11-18) Pepperdine | Home | L | 0.146 |
| Thu 01/24/2013 | Albert Gersten Pavilion, Los Angeles, CA
| 57 - 60 | 178 (11-18) Pepperdine at 171 (10-22) Loyola Mary | Away | W | 0.624 |
| Sat 01/26/2013 | McKeon Pavilion, Moraga, CA
| 84 - 72 | 178 (11-18) Pepperdine at 23 (27-7) Saint Marys | Away | L | 0.006 |
| Thu 01/31/2013 | Firestone Fieldhouse, Malibu, CA
| 61 - 63 | 46 (23-12) BYU at 178 (11-18) Pepperdine | Home | L | 0.378 |
| Sat 02/02/2013 | Firestone Fieldhouse, Malibu, CA
| 78 - 86 | 136 (13-16) San Francisco at 178 (11-18) Pepperdine | Home | L | 0.422 |
| Thu 02/07/2013 | McCarthey Athletic Center, Spokane, WA
| 82 - 56 | 178 (11-18) Pepperdine at 9 (31-3) Gonzaga | Away | L | 0.001 |
| Sat 02/09/2013 | Earle A. Chiles Center, Portland, OR
| 68 - 72 | 178 (11-18) Pepperdine at 161 (9-21) Portland | Away | W | 0.399 |
| Thu 02/14/2013 | Firestone Fieldhouse, Malibu, CA
| 52 - 50 | 171 (10-22) Loyola Mary at 178 (11-18) Pepperdine | Home | W | 0.649 |
| Sat 02/16/2013 | Leavey Center, Santa Clara, CA
| 70 - 60 | 178 (11-18) Pepperdine at 69 (24-12) Santa Clara | Away | L | 0.022 |
| Sat 02/23/2013 | War Memorial Gymnasium, San Francisco, CA
| 64 - 58 | 178 (11-18) Pepperdine at 136 (13-16) San Francisco | Away | L | 0.297 |
| Wed 02/27/2013 | Firestone Fieldhouse, Malibu, CA
| 48 - 87 | 23 (27-7) Saint Marys at 178 (11-18) Pepperdine | Home | L | 0.009 |
| Sat 03/02/2013 | Jenny Craig Pavilion, San Diego, CA
| 76 - 69 | 178 (11-18) Pepperdine at 149 (14-18) San Diego | Away | L | 0.150 |
| Thu 03/07/2013 | Orleans Arena, Las Vegas, NV
| 62 - 59 | 178 (11-18) Pepperdine at 149 (14-18) San Diego | Neutral | L | 0.133 |