| Game Date | Arena | Score | Opponent | Location | Outcome | Game Chart |
| Wed 11/14/2012 | Chaifetz Arena, St. Louis, MO
| 62 - 74 | 69 (24-12) Santa Clara at 16 (28-7) Saint Louis | Away | W | 0.825 |
| Tue 11/20/2012 | Leavey Center, Santa Clara, CA
| 85 - 65 | 259 (14-17) USC Upstate at 69 (24-12) Santa Clara | Home | W | 0.985 |
| Wed 11/21/2012 | Leavey Center, Santa Clara, CA
| 75 - 67 | 315 (10-18) Utah Valley at 69 (24-12) Santa Clara | Home | W | 0.855 |
| Fri 11/23/2012 | Leavey Center, Santa Clara, CA
| 89 - 74 | 251 (10-21) E Washington at 69 (24-12) Santa Clara | Home | W | 0.984 |
| Wed 11/28/2012 | Leavey Center, Santa Clara, CA
| 78 - 80 | 111 (20-10) Utah St at 69 (24-12) Santa Clara | Home | L | 0.570 |
| Sat 12/01/2012 | Leavey Center, Santa Clara, CA
| 80 - 83 | 244 (9-20) UC Santa Barbara at 69 (24-12) Santa Clara | Home | L | 0.843 |
| Tue 12/11/2012 | San Jose State Event Center, San Jose, CA
| 54 - 75 | 69 (24-12) Santa Clara at 237 (8-20) San Jose St | Away | W | 0.955 |
| Sat 12/15/2012 | Spanos Center, Stockton, CA
| 71 - 75 | 69 (24-12) Santa Clara at 123 (20-13) Pacific | Away | W | 0.462 |
| Mon 12/17/2012 | Leavey Center, Santa Clara, CA
| 72 - 64 | 196 (16-14) Cal Poly at 69 (24-12) Santa Clara | Home | W | 0.877 |
| Fri 12/21/2012 | Leavey Center, Santa Clara, CA
| 70 - 58 | 290 (9-23) Alcorn St at 69 (24-12) Santa Clara | Home | W | 0.954 |
| Sat 12/22/2012 | Leavey Center, Santa Clara, CA
| 69 - 45 | 182 (19-12) Wagner at 69 (24-12) Santa Clara | Home | W | 0.988 |
| Sat 12/29/2012 | Cameron Indoor Stadium, Durham, NC
| 90 - 77 | 69 (24-12) Santa Clara at 2 (30-6) Duke | Away | L | 0.082 |
| Wed 01/02/2013 | Leavey Center, Santa Clara, CA
| 74 - 69 | 136 (13-16) San Francisco at 69 (24-12) Santa Clara | Home | W | 0.867 |
| Sat 01/05/2013 | Leavey Center, Santa Clara, CA
| 74 - 81 | 9 (31-3) Gonzaga at 69 (24-12) Santa Clara | Home | L | 0.161 |
| Thu 01/10/2013 | Albert Gersten Pavilion, Los Angeles, CA
| 84 - 80 | 69 (24-12) Santa Clara at 171 (10-22) Loyola Mary | Away | L | 0.618 |
| Sat 01/12/2013 | Leavey Center, Santa Clara, CA
| 64 - 82 | 46 (23-12) BYU at 69 (24-12) Santa Clara | Home | L | 0.146 |
| Thu 01/17/2013 | War Memorial Gymnasium, San Francisco, CA
| 54 - 85 | 69 (24-12) Santa Clara at 136 (13-16) San Francisco | Away | W | 0.866 |
| Sat 01/19/2013 | Firestone Fieldhouse, Malibu, CA
| 76 - 83 | 69 (24-12) Santa Clara at 178 (11-18) Pepperdine | Away | W | 0.853 |
| Wed 01/23/2013 | Leavey Center, Santa Clara, CA
| 66 - 36 | 293 (10-16) CS Bakersfield at 69 (24-12) Santa Clara | Home | W | 1 |
| Sat 01/26/2013 | Jenny Craig Pavilion, San Diego, CA
| 50 - 64 | 69 (24-12) Santa Clara at 149 (14-18) San Diego | Away | W | 0.727 |
| Thu 01/31/2013 | Leavey Center, Santa Clara, CA
| 70 - 46 | 161 (9-21) Portland at 69 (24-12) Santa Clara | Home | W | 0.995 |
| Sat 02/02/2013 | Marriott Center, Provo, UT
| 96 - 79 | 69 (24-12) Santa Clara at 46 (23-12) BYU | Away | L | 0.067 |
| Thu 02/07/2013 | Leavey Center, Santa Clara, CA
| 63 - 84 | 23 (27-7) Saint Marys at 69 (24-12) Santa Clara | Home | L | 0.062 |
| Thu 02/14/2013 | Leavey Center, Santa Clara, CA
| 61 - 52 | 149 (14-18) San Diego at 69 (24-12) Santa Clara | Home | W | 0.702 |
| Sat 02/16/2013 | Leavey Center, Santa Clara, CA
| 70 - 60 | 178 (11-18) Pepperdine at 69 (24-12) Santa Clara | Home | W | 0.977 |
| Wed 02/20/2013 | McCarthey Athletic Center, Spokane, WA
| 85 - 42 | 69 (24-12) Santa Clara at 9 (31-3) Gonzaga | Away | L | 0.006 |
| Sat 02/23/2013 | Earle A. Chiles Center, Portland, OR
| 63 - 75 | 69 (24-12) Santa Clara at 161 (9-21) Portland | Away | W | 0.935 |
| Thu 02/28/2013 | Leavey Center, Santa Clara, CA
| 79 - 56 | 171 (10-22) Loyola Mary at 69 (24-12) Santa Clara | Home | W | 0.989 |
| Sat 03/02/2013 | McKeon Pavilion, Moraga, CA
| 80 - 67 | 69 (24-12) Santa Clara at 23 (27-7) Saint Marys | Away | L | 0.035 |
| Fri 03/08/2013 | Orleans Arena, Las Vegas, NV
| 58 - 60 | 171 (10-22) Loyola Mary at 69 (24-12) Santa Clara | Neutral | L | 0.810 |
| Tue 03/19/2013 | Leavey Center, Santa Clara, CA
| 77 - 67 | 139 (21-12) Vermont at 69 (24-12) Santa Clara | Home | W | 0.924 |
| Mon 03/25/2013 | Mackey Arena, West Lafayette, IN
| 83 - 86 | 69 (24-12) Santa Clara at 78 (16-18) Purdue | Away | W | 0.628 |
| Wed 03/27/2013 | Ervin J. Nutter Center, Dayton, OH
| 69 - 81 | 69 (24-12) Santa Clara at 141 (22-13) Wright St | Away | W | 0.678 |
| Mon 04/01/2013 | Leavey Center, Santa Clara, CA
| 81 - 73 | 109 (22-16) George Mason at 69 (24-12) Santa Clara | Home | W | 0.829 |
| Wed 04/03/2013 | Recreation and Athletic Complex, Fairfax, VA
| 73 - 66 | 69 (24-12) Santa Clara at 109 (22-16) George Mason | Away | L | 0.132 |
| Fri 04/05/2013 | Patriot Center, Fairfax, VA
| 77 - 80 | 69 (24-12) Santa Clara at 109 (22-16) George Mason | Away | W | 0.458 |